claude-scientific-skills

Name: claude-scientific-skills
Author: microck

github.com/microckData & databases40848 installsUpdated 17w ago

About claude-scientific-skills

Claude Scientific Skills Collection is a set of ready-to-use skills for scientific research workflows. It covers domains from bioinformatics and clinical research to physics and engineering, with documentation, code examples, and integration guides for each skill.

Key features

01Skills across scientific domains
02Scientific database coverage
03Python package integrations
04Research and writing tools
05Examples and reference guides

Use cases

01Run bioinformatics analyses
02Explore drug discovery workflows
03Analyze clinical research data
04Conduct literature reviews and scientific writing

Install

Copy the command and run it in a terminal.

$npx skills add https://github.com/microck/ordinary-claude-skills --skill claude-scientific-skills

After installing, type/claude-scientific-skillsin Claude Code to confirm it loaded.

Bundled files

References and scripts installed along with SKILL.md.

.gitignore

LICENSE.md

README.md

.claude-plugin/

marketplace.json

.github/workflows/

release.yml

docs/

examples.md

scientific-skills.md

scientific-skills/adaptyv/reference/

api_reference.md

examples.md

experiments.md

protein_optimization.md

scientific-skills/aeon/references/

anomaly_detection.md

classification.md

clustering.md

datasets_benchmarking.md

distances.md

forecasting.md

networks.md

regression.md

segmentation.md

similarity_search.md

transformations.md

scientific-skills/alphafold-database/references/

api_reference.md

scientific-skills/anndata/references/

best_practices.md

concatenation.md

data_structure.md

io_operations.md

manipulation.md

scientific-skills/arboreto/references/

algorithms.md

basic_inference.md

Details

From the project README

Claude Scientific Skills Collection

A comprehensive collection of 128+ ready-to-use scientific skills that transforms Claude into an AI research assistant capable of executing complex multi-step scientific workflows.

Scientific Domains

🧬 Bioinformatics & Genomics

Sequence analysis, single-cell RNA-seq, gene regulatory networks, variant annotation, phylogenetic analysis

🧪 Cheminformatics & Drug Discovery

Molecular property prediction, virtual screening, ADMET analysis, molecular docking, lead optimization

🔬 Proteomics & Mass Spectrometry

LC-MS/MS processing, peptide identification, spectral matching, protein quantification

🏥 Clinical Research & Precision Medicine

Clinical trials, pharmacogenomics, variant interpretation, drug safety, precision therapeutics

🧠 Healthcare AI & Clinical ML

EHR analysis, physiological signal processing, medical imaging, clinical prediction models

🖼️ Medical Imaging & Digital Pathology

DICOM processing, whole slide image analysis, computational pathology, radiology workflows

🤖 Machine Learning & AI

Deep learning, reinforcement learning, time series analysis, model interpretability, Bayesian methods

🔮 Materials Science & Chemistry

Crystal structure analysis, phase diagrams, metabolic modeling, computational chemistry

🌌 Physics & Astronomy

Astronomical data analysis, cosmological calculations, symbolic mathematics, physics computations

⚙️ Engineering & Simulation

Discrete-event simulation, optimization, metabolic engineering, systems modeling

Included Skill Categories

26+ Scientific Databases - OpenAlex, PubMed, ChEMBL, UniProt, COSMIC, ClinicalTrials.gov
54+ Python Packages - RDKit, Scanpy, PyTorch, scikit-learn, BioPython, PennyLane, Qiskit
15+ Scientific Integrations - Benchling, DNAnexus, LatchBio, OMERO, Protocols.io
20+ Analysis & Communication Tools - Literature review, scientific writing, peer review

Getting Started

Each skill within this collection includes:

Comprehensive documentation (SKILL.md)
Practical code examples
Use cases and best practices
Integration guides
Reference materials

Explore the scientific-skills/ subdirectory for individual skill implementations and detailed documentation.

Comments

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Details

Author: microck
Repository: microck/ordinary-claude-skills
Category: Data & databases
Installs: 48
GitHub stars: 408

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