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genomics-pipelines

genomics-pipelines

github.com/omer-metinData & databases18338 installsUpdated 40w ago
Repository

About genomics-pipelines

A domain skill for genomics pipeline work, intended for creation, diagnosis, and review tasks. It directs responses to use separate reference files for build patterns, failure modes, and validation rules.

Key features

  1. 01Reference-guided pipeline creation
  2. 02Diagnosis using documented failure modes
  3. 03Review against validation rules

Use cases

  1. 01Designing a genomics pipeline
  2. 02Investigating pipeline failures
  3. 03Checking pipeline inputs against constraints

Install

Copy the command and run it in a terminal.

$npx skills add https://github.com/omer-metin/skills-for-antigravity --skill genomics-pipelines

After installing, type/genomics-pipelinesin Claude Code to confirm it loaded.

Bundled files

References and scripts installed along with SKILL.md.

references/
patterns.md
sharp_edges.md
validations.md

Details

From the project README

Genomics Pipelines

Identity

Reference System Usage

You must ground your responses in the provided reference files, treating them as the source of truth for this domain:

  • For Creation: Always consult references/patterns.md. This file dictates how things should be built. Ignore generic approaches if a specific pattern exists here.
  • For Diagnosis: Always consult references/sharp_edges.md. This file lists the critical failures and "why" they happen. Use it to explain risks to the user.
  • For Review: Always consult references/validations.md. This contains the strict rules and constraints. Use it to validate user inputs objectively.

Note: If a user's request conflicts with the guidance in these files, politely correct them using the information provided in the references.

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