health-data-analysis

Health Data Analysis

Specialized skill for managing and analyzing personal health data, medical records, and optimization protocols.

When to use this skill

Use this skill when:

• Analyzing lab results and clinical data
• Reviewing health records (776 FHIR files available)
• Planning supplement protocols
• Tracking health metrics over time
• Interpreting medical reports
• Managing chronic conditions (Hashimoto's thyroiditis)
• Optimizing cardiovascular health
• Working with health data exports

Data Sources

Available Records

Location: health/ directory (1.3GB)

Contents:

• 776 FHIR-formatted clinical records (2017-2025)
• 405 diagnostic reports (comprehensive lab history)
• 333 observations (vital signs, measurements)
• 18 medication requests (prescription history)
• Lab results in PDF format
• Apple Health export data
• Workout routes and fitness data

Key Files

• clinical-history-summary.md: Overview of medical conditions
• context.md: Detailed health history and current protocols (30KB)
• function-health-report-2025-09-17.md: Functional health assessment
• lab-values-2025-09-17.md: Recent lab results
• export.xml and export_cda.xml: Complete health data exports

Medical Context

Primary Conditions

Hashimoto's Thyroiditis (2017-present)

• Autoimmune hypothyroidism
• Currently on levothyroxine 100 mcg
• TSH trending elevated (needs monitoring)
• TPO antibodies >900 IU/mL
• Requires careful supplement coordination

Cardiovascular Risk Management

• Elevated LDL-C (146 mg/dL)
• Homocysteine ~22.6 μmol/L (target <10)
• Active lipid management protocol
• Plant sterols, berberine, omega-3 supplementation

Other Conditions

• Kidney function monitoring (creatinine trending)
• Rosacea (facial and ocular)
• Mercury exposure (dietary)
• Parathyroid adenoma surveillance

Current Protocols

Supplement Regimen

Comprehensive protocol including:

• Thyroid support (selenium, myo-inositol)
• Cardiovascular support (omega-3, plant sterols, berberine)
• Methylation support (TMG, B-complex)
• Vitamins and minerals (D3, K complex, magnesium, zinc, copper)
• Hair health (Nutrafol Men)
• Cognitive support (L-theanine)

Important Interactions

• Levothyroxine timing: Empty stomach, 45-60 min before food
• Mineral separation: ≥4 hours from levothyroxine
• Biotin interference: Stop Nutrafol 3-5 days before thyroid labs
• Iodine monitoring: Nutrafol contains 225 mcg (watch thyroid function)

Dietary Approach

• Gluten-free Mediterranean diet
• Low-mercury fish emphasis
• 30-40g fiber daily
• Anti-inflammatory focus

Analysis Guidelines

Lab Result Interpretation

When analyzing labs:

1. Compare to reference ranges (provided in reports)
2. Track trends over time (historical data available)
3. Consider medication effects
4. Note supplement interactions
5. Flag concerning changes
6. Recommend timing for follow-up

Trend Analysis

Use historical data to:

• Identify patterns in thyroid function
• Track cardiovascular markers
• Monitor kidney function changes
• Assess supplement efficacy
• Detect emerging issues early

Protocol Optimization

When adjusting protocols:

1. Review current supplement list and timing
2. Check for interactions and overlaps
3. Consider lab results and trends
4. Align with medical provider recommendations
5. Document rationale for changes
6. Set follow-up monitoring schedule

Data Privacy

CRITICAL: This skill handles sensitive personal health information

• Never share specific health data externally
• Keep analyses within secure environment
• Maintain HIPAA-level privacy standards
• Document access and usage appropriately

Clinical Monitoring

Key Metrics to Track

Thyroid Function (every 6-8 weeks initially):

• TSH (target 1-2.5 mIU/L)
• Free T4
• Free T3
• Thyroid antibodies (TPO, TgAb)

Cardiovascular Risk (8-12 weeks):

• Lipid panel (total chol, LDL, HDL, TG)
• ApoB (target <90 mg/dL)
• Homocysteine (target <10 μmol/L)
• hs-CRP (inflammation)
• Omega-3 index

Kidney Function (as needed):

• Creatinine
• eGFR
• Cystatin C
• BUN

Nutritional Status (quarterly):

• Vitamin D (target 40-60 ng/mL)
• B12
• Folate
• Ferritin

Common Tasks

Reviewing New Labs

1. Read lab report PDF or data
2. Extract key values
3. Compare to reference ranges
4. Check historical trends
5. Identify concerns or improvements
6. Recommend follow-up actions

Protocol Adjustments

1. Review current protocol in context.md
2. Identify need for change (labs, symptoms, goals)
3. Research interactions and evidence
4. Propose specific changes with rationale
5. Update timing schedules if needed
6. Set monitoring plan

Health Data Export Analysis

1. Parse FHIR XML files
2. Extract relevant observations
3. Create structured summaries
4. Identify patterns or anomalies
5. Generate visualizations if helpful

Best Practices

Evidence-Based Approach

• Reference clinical guidelines
• Use peer-reviewed research
• Consider functional medicine principles
• Balance optimization with safety
• Acknowledge limitations and uncertainty

Clear Communication

• Use plain language for complex concepts
• Provide context for recommendations
• Explain clinical significance
• Include both numbers and interpretation
• Suggest next steps clearly

Safety First

• Flag concerning values immediately
• Recommend medical consultation when appropriate
• Don't override provider recommendations
• Consider drug-supplement interactions
• Respect individual tolerance and preferences

Resources

Internal References

• health/context.md: Complete health history and protocols
• health/clinical-history-summary.md: Condition overview
• health/clinical-records/: 776 FHIR files
• Lab PDFs for specific results

External Guidelines

• Thyroid management: ATA guidelines
• Cardiovascular risk: ACC/AHA guidelines
• Supplement safety: NIH databases
• Drug interactions: Clinical databases

Related Skills

• Use for medical data analysis
• Combine with note-management for organizing health documentation
• Use context-manager for complex health optimization projects