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mongodb

mongodb

github.com/bobmatnycData & databases78346 installsUpdated 15w ago
Repository

About mongodb

A skill guide to MongoDB document modeling, querying, indexing, aggregation, and performance practices. It is for developers designing or optimizing applications that use MongoDB.

Key features

  1. 01Flexible document schema patterns
  2. 02CRUD queries and update operators
  3. 03Indexing and query optimization
  4. 04Aggregation pipelines for analytics
  5. 05Change streams and transactions

Use cases

  1. 01Modeling nested or evolving application data
  2. 02Building indexed search and query patterns
  3. 03Analyzing records with aggregation
  4. 04Receiving real-time database change events

Install

Copy the command and run it in a terminal.

$npx skills add https://github.com/bobmatnyc/claude-mpm-skills --skill mongodb

After installing, type/mongodbin Claude Code to confirm it loaded.

Bundled filesmetadata.json

Details

From the project README

MongoDB - Document Database Patterns

Overview

MongoDB is a document-oriented NoSQL database that stores data in flexible, JSON-like documents. It excels at handling unstructured or semi-structured data, hierarchical relationships, and scenarios requiring horizontal scaling.

Key Features:

  • Flexible schema (schemaless documents)
  • Rich query language with secondary indexes
  • Aggregation framework for analytics
  • Horizontal scaling (sharding)
  • Replica sets for high availability
  • Change streams for real-time data
  • Geospatial and full-text search

When to Use MongoDB:

  • Rapidly evolving schemas
  • Hierarchical/nested data (embedded documents)
  • Real-time analytics with aggregation
  • Geospatial applications
  • Content management systems
  • IoT data ingestion
  • Catalog/inventory systems

When NOT to Use MongoDB:

  • Complex multi-table joins (use RDBMS)
  • ACID transactions across many documents (improved in 4.0+, but limited)
  • Strict schema enforcement requirements

Schema Design Fundamentals

Document Structure
// MongoDB document (BSON format)
{
  "_id": ObjectId("507f1f77bcf86cd799439011"),  // Primary key (auto-generated)
  "email": "[email protected]",
  "name": "Alice Johnson",
  "profile": {                                   // Embedded document
    "bio": "Software developer",
    "avatar": "https://example.com/avatar.jpg",
    "social": {
      "twitter": "@alice",
      "github": "alice-dev"
    }
  },
  "tags": ["developer", "python", "mongodb"],    // Array field
  "createdAt": ISODate("2024-01-15T10:30:00Z"),
  "updatedAt": ISODate("2024-01-20T14:22:00Z")
}
Embedded vs Referenced Documents

Embedded (Denormalized) - Store related data in same document:

// Embedded: Good for 1:1 or 1:Few relationships
// User with embedded address
{
  "_id": ObjectId("..."),
  "name": "Alice",
  "address": {
    "street": "123 Main St",
    "city": "San Francisco",
    "zipCode": "94102"
  }
}

// Embedded: Order with line items (1:Many bounded)
{
  "_id": ObjectId("..."),
  "orderNumber": "ORD-2024-001",
  "customer": { "name": "Alice", "email": "[email protected]" },
  "items": [
    { "productId": "SKU001", "name": "Widget", "quantity": 2, "price": 29.99 },
    { "productId": "SKU002", "name": "Gadget", "quantity": 1, "price": 49.99 }
  ],
  "total": 109.97
}

When to Embed:

  • Data is queried together frequently
  • Child data doesn't make sense without parent
  • 1:1 or 1:Few relationships
  • Child data is bounded (won't grow unbounded)
  • Data doesn't need to be accessed independently

Referenced (Normalized) - Store references to other documents:

// Referenced: Good for 1:Many unbounded or Many:Many
// User document
{
  "_id": ObjectId("user123"),
  "name": "Alice",
  "email": "[email protected]"
}

// Posts collection (references user)
{
  "_id": ObjectId("post456"),
  "authorId": ObjectId("user123"),   // Reference to user
  "title": "MongoDB Schema Design",
  "content": "...",
  "commentCount": 42
}

// Comments collection (references post)
{
  "_id": ObjectId("comment789"),
  "postId": ObjectId("post456"),     // Reference to post
  "authorId": ObjectId("user999"),   // Reference to commenter
  "text": "Great article!",
  "createdAt": ISODate("2024-01-20T10:00:00Z")
}

When to Reference:

  • Many:Many relationships
  • 1:Many with unbounded growth (comments, logs)
  • Data is accessed independently
  • Document size would exceed 16MB limit
  • Need atomic updates on referenced document
Hybrid Pattern (Extended Reference)
// Post with denormalized author info + reference
{
  "_id": ObjectId("post456"),
  "title": "MongoDB Best Practices",
  "content": "...",
  "author": {
    "_id": ObjectId("user123"),      // Reference for lookups
    "name": "Alice",                 // Denormalized for display
    "avatar": "https://..."          // Frequently needed fields
  },
  "commentCount": 42,
  "lastCommentAt": ISODate("...")
}

Query Patterns

Basic CRUD Operations
// Find documents
db.users.find({ email: "[email protected]" })
db.users.find({ age: { $gte: 18, $lte: 65 } })
db.users.find({ tags: { $in: ["developer", "designer"] } })

// Find with projection (select specific fields)
db.users.find(
  { status: "active" },
  { name: 1, email: 1, _id: 0 }  // Include name, email; exclude _id
)

// Find one
db.users.findOne({ email: "[email protected]" })

// Insert
db.users.insertOne({ name: "Bob", email: "[email protected]" })
db.users.insertMany([
  { name: "Charlie", email: "[email protected]" },
  { name: "Diana", email: "[email protected]" }
])

// Update
db.users.updateOne(
  { email: "[email protected]" },
  { $set: { name: "Alice Updated", updatedAt: new Date() } }
)

db.users.updateMany(
  { status: "inactive" },
  { $set: { archived: true } }
)

// Upsert (update or insert)
db.users.updateOne(
  { email: "[email protected]" },
  { $set: { name: "New User", createdAt: new Date() } },
  { upsert: true }
)

// Delete
db.users.deleteOne({ email: "[email protected]" })
db.users.deleteMany({ status: "deleted" })
Query Operators
// Comparison
db.products.find({ price: { $gt: 100 } })        // Greater than
db.products.find({ price: { $gte: 100 } })       // Greater than or equal
db.products.find({ price: { $lt: 50 } })         // Less than
db.products.find({ price: { $lte: 50 } })        // Less than or equal
db.products.find({ price: { $ne: 0 } })          // Not equal
db.products.find({ category: { $in: ["A", "B"] } })   // In array
db.products.find({ category: { $nin: ["C", "D"] } })  // Not in array

// Logical
db.users.find({ $and: [{ age: { $gte: 18 } }, { status: "active" }] })
db.users.find({ $or: [{ role: "admin" }, { role: "moderator" }] })
db.users.find({ age: { $not: { $lt: 18 } } })

// Element
db.users.find({ middleName: { $exists: true } })  // Field exists
db.users.find({ age: { $type: "number" } })       // Field type

// Array
db.posts.find({ tags: "mongodb" })                // Contains element
db.posts.find({ tags: { $all: ["mongodb", "database"] } })  // Contains all
db.posts.find({ tags: { $size: 3 } })             // Array size
db.posts.find({ "tags.0": "featured" })           // First element

// Embedded documents
db.users.find({ "address.city": "San Francisco" })
db.users.find({ "profile.social.twitter": { $exists: true } })

// Regex
db.users.find({ name: { $regex: /^alice/i } })
db.users.find({ email: { $regex: /@example\.com$/ } })
Update Operators
// Field updates
db.users.updateOne(
  { _id: userId },
  {
    $set: { name: "New Name" },           // Set field value
    $unset: { temporaryField: "" },       // Remove field
    $rename: { oldName: "newName" },      // Rename field
    $inc: { loginCount: 1 },              // Increment
    $mul: { price: 1.1 },                 // Multiply
    $min: { lowestScore: 50 },            // Set if less than current
    $max: { highestScore: 100 },          // Set if greater than current
    $currentDate: { updatedAt: true }     // Set to current date
  }
)

// Array updates
db.posts.updateOne(
  { _id: postId },
  {
    $push: { tags: "new-tag" },           // Add to array
    $addToSet: { tags: "unique-tag" },    // Add if not exists
    $pop: { tags: 1 },                    // Remove last (-1 for first)
    $pull: { tags: "old-tag" },           // Remove specific value
    $pullAll: { tags: ["a", "b"] }        // Remove multiple values
  }
)

// Array with modifiers
db.posts.updateOne(
  { _id: postId },
  {
    $push: {
      comments: {
        $each: [comment1, comment2],      // Add multiple
        $sort: { createdAt: -1 },         // Sort after push
        $slice: -100                      // Keep only last 100
      }
    }
  }
)

// Positional update (update matched array element)
db.posts.updateOne(
  { _id: postId, "comments._id": commentId },
  { $set: { "comments.$.text": "Updated comment" } }
)

// Update all matching array elements
db.posts.updateOne(
  { _id: postId },
  { $set: { "comments.$[elem].read": true } },
  { arrayFilters: [{ "elem.userId": currentUserId }] }
)

Indexing Strategies

Index Types
// Single field index
db.users.createIndex({ email: 1 })         // Ascending
db.users.createIndex({ createdAt: -1 })    // Descending

// Compound index
db.orders.createIndex({ customerId: 1, createdAt: -1 })

// Unique index
db.users.createIndex({ email: 1 }, { unique: true })

// Partial index (index subset of documents)
db.orders.createIndex(
  { createdAt: 1 },
  { partialFilterExpression: { status: "pending" } }
)

// TTL index (auto-delete old documents)
db.sessions.createIndex(
  { createdAt: 1 },
  { expireAfterSeconds: 3600 }  // Delete after 1 hour
)

// Text index (full-text search)
db.articles.createIndex({ title: "text", content: "text" })
// Query: db.articles.find({ $text: { $search: "mongodb tutorial" } })

// Geospatial index
db.locations.createIndex({ coordinates: "2dsphere" })
// Query: db.locations.find({
//   coordinates: {
//     $near: {
//       $geometry: { type: "Point", coordinates: [-122.4, 37.8] },
//       $maxDistance: 5000  // meters
//     }
//   }
// })

// Multikey index (for array fields - automatic)
db.posts.createIndex({ tags: 1 })

// Hashed index (for sharding)
db.users.createIndex({ email: "hashed" })
Index Best Practices
// ESR Rule for compound indexes: Equality, Sort, Range
// Query: find users where status = "active", sorted by createdAt, age > 18
// Index: { status: 1, createdAt: -1, age: 1 }
//        ^Equality   ^Sort          ^Range

// Covered queries (all fields in index)
db.users.createIndex({ email: 1, name: 1, status: 1 })
db.users.find(
  { email: "[email protected]" },
  { name: 1, status: 1, _id: 0 }  // All fields from index
)
// Check with explain: "totalDocsExamined": 0

// Analyze query performance
db.users.find({ email: "[email protected]" }).explain("executionStats")
// Look for:
// - IXSCAN (index scan) vs COLLSCAN (collection scan)
// - totalDocsExamined vs totalKeysExamined
// - executionTimeMillis

// List indexes
db.users.getIndexes()

// Drop index
db.users.dropIndex("email_1")
db.users.dropIndex({ email: 1, name: 1 })

Aggregation Pipeline

Pipeline Stages
// Basic aggregation structure
db.orders.aggregate([
  { $match: { status: "completed" } },           // Filter (like WHERE)
  { $group: { _id: "$customerId", total: { $sum: "$amount" } } },  // Group
  { $sort: { total: -1 } },                      // Sort
  { $limit: 10 }                                 // Limit results
])

// Common stages
db.collection.aggregate([
  // $match - Filter documents
  { $match: { status: "active", createdAt: { $gte: ISODate("2024-01-01") } } },

  // $project - Reshape documents (include/exclude/compute fields)
  { $project: {
    name: 1,
    email: 1,
    fullName: { $concat: ["$firstName", " ", "$lastName"] },
    yearCreated: { $year: "$createdAt" }
  }},

  // $addFields - Add new fields (keeps existing)
  { $addFields: {
    totalPrice: { $multiply: ["$price", "$quantity"] }
  }},

  // $group - Group and aggregate
  { $group: {
    _id: "$category",
    count: { $sum: 1 },
    totalRevenue: { $sum: "$amount" },
    avgPrice: { $avg: "$price" },
    maxPrice: { $max: "$price" },
    products: { $push: "$name" },          // Collect into array
    uniqueTags: { $addToSet: "$tag" }      // Unique values
  }},

  // $sort
  { $sort: { totalRevenue: -1, count: 1 } },

  // $skip and $limit (pagination)
  { $skip: 20 },
  { $limit: 10 },

  // $unwind - Deconstruct array field
  { $unwind: "$tags" },
  // { tags: ["a", "b"] } becomes { tags: "a" }, { tags: "b" }

  // $lookup - Join collections
  { $lookup: {
    from: "users",
    localField: "authorId",
    foreignField: "_id",
    as: "author"
  }},
  { $unwind: "$author" },  // Convert single-element array to object

  // $facet - Multiple pipelines in parallel
  { $facet: {
    results: [{ $skip: 0 }, { $limit: 10 }],
    totalCount: [{ $count: "count" }]
  }}
])
Real-World Aggregation Examples
// Sales analytics by month
db.orders.aggregate([
  { $match: { status: "completed" } },
  { $group: {
    _id: {
      year: { $year: "$createdAt" },
      month: { $month: "$createdAt" }
    },
    totalSales: { $sum: "$amount" },
    orderCount: { $sum: 1 },
    avgOrderValue: { $avg: "$amount" }
  }},
  { $sort: { "_id.year": -1, "_id.month": -1 } }
])

// Top customers with order details
db.orders.aggregate([
  { $match: { createdAt: { $gte: ISODate("2024-01-01") } } },
  { $group: {
    _id: "$customerId",
    totalSpent: { $sum: "$amount" },
    orderCount: { $sum: 1 },
    lastOrder: { $max: "$createdAt" }
  }},
  { $sort: { totalSpent: -1 } },
  { $limit: 10 },
  { $lookup: {
    from: "customers",
    localField: "_id",
    foreignField: "_id",
    as: "customer"
  }},
  { $unwind: "$customer" },
  { $project: {
    customerName: "$customer.name",
    customerEmail: "$customer.email",
    totalSpent: 1,
    orderCount: 1,
    lastOrder: 1
  }}
])

// Product category performance with nested unwind
db.orders.aggregate([
  { $unwind: "$items" },
  { $lookup: {
    from: "products",
    localField: "items.productId",
    foreignField: "_id",
    as: "product"
  }},
  { $unwind: "$product" },
  { $group: {
    _id: "$product.category",
    totalRevenue: { $sum: { $multiply: ["$items.quantity", "$items.price"] } },
    unitsSold: { $sum: "$items.quantity" },
    uniqueProducts: { $addToSet: "$product._id" }
  }},
  { $addFields: {
    uniqueProductCount: { $size: "$uniqueProducts" }
  }},
  { $sort: { totalRevenue: -1 } }
])

Transactions (MongoDB 4.0+)

// Multi-document transaction
const session = client.startSession();

try {
  session.startTransaction();

  // Transfer money between accounts
  await accounts.updateOne(
    { _id: fromAccountId },
    { $inc: { balance: -amount } },
    { session }
  );

  await accounts.updateOne(
    { _id: toAccountId },
    { $inc: { balance: amount } },
    { session }
  );

  await transactions.insertOne(
    {
      from: fromAccountId,
      to: toAccountId,
      amount: amount,
      createdAt: new Date()
    },
    { session }
  );

  await session.commitTransaction();
} catch (error) {
  await session.abortTransaction();
  throw error;
} finally {
  session.endSession();
}

Change Streams

// Watch for changes in real-time
const changeStream = db.orders.watch([
  { $match: { "fullDocument.status": "pending" } }
]);

changeStream.on("change", (change) => {
  console.log("Change detected:", change.operationType);
  console.log("Document:", change.fullDocument);

  if (change.operationType === "insert") {
    // Process new pending order
    processNewOrder(change.fullDocument);
  }
});

// Resume from specific point (for fault tolerance)
const resumeToken = change._id;
const changeStream = db.orders.watch([], {
  resumeAfter: resumeToken,
  fullDocument: "updateLookup"  // Include full document on updates
});

Spring Data MongoDB Integration

Entity Class
@Document(collection = "users")
@Data
@Builder
@NoArgsConstructor
@AllArgsConstructor
public class User {

    @Id
    private String id;  // Maps to _id

    @Indexed(unique = true)
    private String email;

    private String name;

    @Field("password_hash")  // Custom field name
    private String passwordHash;

    @DBRef  // Reference to another collection
    private List<Role> roles;

    private Address address;  // Embedded document

    private List<String> tags;

    @CreatedDate
    private LocalDateTime createdAt;

    @LastModifiedDate
    private LocalDateTime updatedAt;

    @Version
    private Long version;  // Optimistic locking
}

@Data
public class Address {
    private String street;
    private String city;
    private String zipCode;

    @GeoSpatialIndexed(type = GeoSpatialIndexType.GEO_2DSPHERE)
    private GeoJsonPoint location;
}
Repository Interface
public interface UserRepository extends MongoRepository<User, String> {

    // Derived queries
    Optional<User> findByEmail(String email);
    List<User> findByNameContainingIgnoreCase(String name);
    List<User> findByTagsContaining(String tag);

    // Custom query with @Query
    @Query("{ 'createdAt': { $gte: ?0 }, 'status': 'active' }")
    List<User> findActiveUsersCreatedAfter(LocalDateTime date);

    // Projection
    @Query(value = "{ 'email': ?0 }", fields = "{ 'name': 1, 'email': 1 }")
    Optional<UserSummary> findSummaryByEmail(String email);

    // Aggregation
    @Aggregation(pipeline = {
        "{ $match: { 'status': 'active' } }",
        "{ $group: { _id: '$country', count: { $sum: 1 } } }",
        "{ $sort: { count: -1 } }"
    })
    List<CountryStats> getActiveUsersByCountry();

    // Geospatial query
    List<User> findByAddressLocationNear(Point location, Distance distance);
}
MongoTemplate for Complex Queries
@Service
@RequiredArgsConstructor
public class UserService {

    private final MongoTemplate mongoTemplate;

    public List<User> searchUsers(UserSearchCriteria criteria) {
        Query query = new Query();

        if (criteria.getName() != null) {
            query.addCriteria(Criteria.where("name")
                .regex(criteria.getName(), "i"));
        }

        if (criteria.getTags() != null && !criteria.getTags().isEmpty()) {
            query.addCriteria(Criteria.where("tags")
                .in(criteria.getTags()));
        }

        if (criteria.getCreatedAfter() != null) {
            query.addCriteria(Criteria.where("createdAt")
                .gte(criteria.getCreatedAfter()));
        }

        query.with(Sort.by(Sort.Direction.DESC, "createdAt"));
        query.with(PageRequest.of(criteria.getPage(), criteria.getSize()));

        return mongoTemplate.find(query, User.class);
    }

    public AggregationResults<UserStats> getUserStatsByStatus() {
        Aggregation aggregation = Aggregation.newAggregation(
            Aggregation.match(Criteria.where("createdAt")
                .gte(LocalDateTime.now().minusMonths(1))),
            Aggregation.group("status")
                .count().as("count")
                .avg("loginCount").as("avgLogins"),
            Aggregation.sort(Sort.Direction.DESC, "count")
        );

        return mongoTemplate.aggregate(aggregation, "users", UserStats.class);
    }

    public void bulkUpdateStatus(List<String> userIds, String newStatus) {
        BulkOperations bulkOps = mongoTemplate.bulkOps(
            BulkOperations.BulkMode.UNORDERED, User.class);

        for (String userId : userIds) {
            Query query = Query.query(Criteria.where("_id").is(userId));
            Update update = Update.update("status", newStatus)
                .currentDate("updatedAt");
            bulkOps.updateOne(query, update);
        }

        bulkOps.execute();
    }
}

Performance Optimization

Connection Pooling
// Spring Boot configuration
spring:
  data:
    mongodb:
      uri: mongodb://localhost:27017/mydb
      auto-index-creation: false  # Create indexes manually in production

# Connection pool settings (via URI)
# mongodb://localhost:27017/mydb?maxPoolSize=50&minPoolSize=10&maxIdleTimeMS=30000
Query Optimization
// Use projections to limit returned fields
db.users.find({ status: "active" }, { name: 1, email: 1 })

// Use hint to force specific index
db.users.find({ status: "active" }).hint({ status: 1, createdAt: -1 })

// Limit results for pagination
db.users.find().sort({ createdAt: -1 }).skip(20).limit(10)

// Use $exists: false for missing fields (can use index)
db.users.createIndex({ optionalField: 1 }, { sparse: true })
db.users.find({ optionalField: { $exists: true } })
Schema Optimization
// Avoid large arrays (cap at reasonable size)
// Use bucketing pattern for time-series data
{
  _id: "sensor1_2024-01-15",
  sensorId: "sensor1",
  date: ISODate("2024-01-15"),
  readings: [
    { ts: ISODate("..."), value: 23.5 },
    { ts: ISODate("..."), value: 24.1 },
    // ... up to N readings per bucket
  ],
  count: 288  // Track count for full bucket detection
}

// Pre-aggregate for reporting
{
  _id: "stats_2024-01",
  month: "2024-01",
  totalOrders: 1523,
  totalRevenue: 152300.50,
  avgOrderValue: 100.00,
  topProducts: ["SKU001", "SKU002", "SKU003"]
}

Best Practices

1. Schema Design
// Embed when: data is queried together, bounded arrays
// Reference when: unbounded arrays, many-to-many, independent access
// Use extended reference pattern for frequently accessed fields
2. Indexing
// Create indexes for query patterns, not just fields
// Use compound indexes following ESR rule
// Monitor slow queries: db.setProfilingLevel(1, { slowms: 100 })
// Avoid indexing low-cardinality fields alone
3. Write Operations
// Use bulk operations for multiple writes
// Avoid unbounded array growth
// Use write concern appropriate to durability needs
db.orders.insertOne(doc, { writeConcern: { w: "majority" } })
4. Read Operations
// Always use projections to limit returned data
// Use explain() to verify index usage
// Prefer aggregation over multiple queries
// Use read preference for scaling reads
db.orders.find().readPref("secondaryPreferred")
5. Connection Management
// Use connection pooling
// Set appropriate pool size (default: 100)
// Handle connection errors with retry logic
// Close connections properly on shutdown

Common Pitfalls

Unbounded array growth:

// BAD: Comments array grows forever
{ _id: "post1", comments: [...thousands of comments...] }

// GOOD: Separate collection with references
{ _id: "comment1", postId: "post1", text: "..." }

Missing indexes:

// Always create indexes for query patterns
// Check with explain() - look for COLLSCAN (bad)
db.users.find({ email: "..." }).explain()

Over-indexing:

// Each index adds write overhead
// Only index fields used in queries
// Monitor index usage: db.users.aggregate([{ $indexStats: {} }])

Resources

Related Skills

When using MongoDB, consider these complementary skills:

  • spring-boot: Java framework integration with Spring Data MongoDB
  • docker: Running MongoDB in containers
  • nodejs: MongoDB with Mongoose ODM
  • aggregation-pipelines: Advanced analytics patterns

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