Skills
96,981 packaged capabilities and playbooks for agents. Install any of them with one command.
Data & databases
Reads, inspects, and writes Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO. Use for low-level FCS metadata and channel inspection, NumPy event extraction, multi-dataset files, table export, and FCS 3.1 creation; use FlowKit for compensation, cytometry transforms, gating, or FlowJo workspaces.
Integrates with the official LabArchives ELN REST-like API and Inventory API v1. Supports regional endpoint selection, signed-request construction, user authorization and UID flows, local LA container validation, and verified LabArchives integration workflows.
Provides Therapeutics Data Commons workflows through PyTDC for registry discovery, dataset access, task-aware splits, evaluator metrics, benchmark groups, and bounded molecular-oracle scoring. Use when working with TDC therapeutic ML datasets or benchmarks.
Operates Amazon Kinesis Data Streams (KDS). Covers streaming tables and Amazon S3 delivery — serverless, fully managed delivery from a KDS stream to Apache Iceberg tables on S3 Tables or to general-purpose S3 buckets. Includes channel setup, IAM, schemas, output key templates, CloudWatch metrics and alarms, DLQ handling, quotas, and troubleshooting. For all other KDS topics and questions, search AWS documentation and blogs instead. Triggers: Kinesis Data Streams, KDS, streaming tables, stream to S3, stream to Iceberg, stream to S3 Tables, KDS delivery, KDS channel, CreateChannel, data channel, data freshness, dead-letter queue, KDS lakehouse, serverless Kinesis delivery, Firehose alternative for KDS, zero-ops Kinesis to S3. DO NOT USE for Kinesis Data Firehose, Kinesis Video Streams, or Managed Service for Apache Flink — use dedicated skills or search documentation instead.
Builds and analyzes phylogenetic trees using MAFFT multiple sequence alignment, IQ-TREE maximum likelihood with ModelFinder and branch support, and FastTree approximate inference. Uses ETE3 for tree summaries and visualization. Applies to homologous nucleotide or protein sequences, microbial gene trees, protein families, and cautiously interpreted dated phylogenies.
Performs RNA velocity analysis with scVelo from spliced and unspliced single-cell RNA counts. Fits deterministic or dynamical models, examines gene phase portraits, builds velocity graphs, estimates relative latent time, and ranks velocity-associated genes. Use for directional trajectory hypotheses and kinetic-model diagnostics alongside Scanpy; velocity alone does not establish cell fate or causal drivers.
Queries the U.S. Treasury Fiscal Data REST API for federal financial data. No API key required. Use for national debt (Debt to the Penny), Daily Treasury Statements, Monthly Treasury Statements, Treasury securities auctions, interest rates, foreign exchange rates, savings bonds, or U.S. government revenue and spending statistics.
Manages biological datasets and models with LaminDB, including artifact registration, lineage tracking, schema validation, Bionty ontology annotation, query/search, collections, branches, storage, and workflow integrations. Use for reproducible biological data curation or a LaminDB lakehouse.
Processes, cleans, compares, and searches tandem mass spectra with matchms. Use for MS/MS file I/O, metadata harmonization, peak filtering, spectral similarity, library matching, score matrices, and molecular-similarity networks. Use pyopenms instead for LC-MS feature detection or proteomics pipelines.
Reads, validates, and safely exports protocols.io data with current official REST/MCP contracts, or creates non-executing mutation plans. The bundled client makes bounded official-host GET requests only with explicit --execute. Use only for tasks explicitly targeting protocols.io or an exact protocols.io protocol version.
Extracts and preprocesses whole-slide histology image tiles with Histolab. Use for WSI inspection, tissue masks, random/grid/score-based tile extraction, H&E stain normalization, and tile dataset preparation. For multiplexed imaging or deep learning inference pipelines, use pathml.
Performs genomic interval overlap, nearest, merge, coverage, complement and subtraction on Polars DataFrames, and reads or writes BED, VCF, BCF, BAM, CRAM, GFF, GTF, FASTA and FASTQ data. Use for coordinate-aware genomic joins, read-depth analysis, lazy bioinformatics I/O, SQL queries or migration from bioframe.
Best practices and guidelines for working with Postgres. Covers schema design, indexing strategies, query optimization, migrations, and common pitfalls. Use when writing SQL, designing database schemas, optimizing queries, or setting up a Postgres database.
Mathematical modeling implementation and data visualization generation stage. Write reproducible code based on ANALYSIS_MODELING_REPORT.md, run the solver, validate constraints, output RESULTS_REPORT.md, and generate a PDF of data-driven charts suitable for use in a paper.
Reads AR/AP, historical cash timing, and known fixed costs from the ledger (MYOB, NetSuite, QuickBooks, Xero, or Zoho Books) or from PayPal, Square, or Stripe — or a CSV upload — and produces a 30/60/90-day cash flow forecast with percentage-variance confidence bands and named risk flags. Delivers a chat summary and a downloadable XLSX. Use when the user asks "forecast my cash flow," "will I make payroll," mentions "runway," or says "cash crunch." Falls back to CSV upload when no connector is live.
Analyzes Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion correction, Kilosort4 (and CPU) spike sorting, quality metrics, and unit curation (threshold-based, model-based UnitRefine, and AI-assisted visual review). Use when working with Neuropixels 1.0/2.0 recordings, spike sorting, or extracellular electrophysiology analysis.
Processes mass spectrometry data with pyOpenMS. Supports proteomics and metabolomics workflows—feature detection, peptide/protein identification, label-free quantification, adduct/accurate-mass annotation, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. For simple spectral comparison and small-molecule library matching use matchms.
Builds and operates reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Supports DNAnexus data transfers, dxapp.json development, execution monitoring, workflow import, and project automation.
Builds, registers, debugs, and operates bioinformatics workflows on Latch using the Python SDK, CLI, Latch Data and Registry, Nextflow, Snakemake, programmatic execution, and Latch MCP. Use when authoring or deploying Latch workflows, configuring resources or interfaces, moving data, integrating Registry, or launching and monitoring runs.
Load a sharded, on-disk dataset (sharded .npy, Parquet/Arrow, raw binary, sharded HDF5, custom layouts) into a distributed cuPyNumeric ndarray via a manual partition + leaf @task launch with CPU/OMP/GPU variants. Use when no single-call loader fits, including when per-shard row counts differ across files. Prefer cupynumeric.load or legate.io.hdf5.from_file when they apply.
Inspects and automates microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use this skill for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.
Use ALWAYS when a prompt mentions GraphQL, lightning/uiGraphQLApi, @wire(graphql, ...), or gql template tags in an LWC context — even if the surface ask is "build an LWC". Owns the ENTIRE flow: introspect the org's LDS GraphQL schema, identify entities/fields, construct the schema-validated gql query or mutation, wire it into the LWC via lightning/uiGraphQLApi, verify against a connected org. REQUIRED whenever a prompt asks to render, list, or edit Salesforce records (Account, Contact, Case, custom objects) via GraphQL — the .html and .js scaffolding IS in scope. DO NOT delegate to experience-lwc-generate: that skill has NO GraphQL schema introspection, NO create_lds_graphql_read_query binding, and defaults to getRecord/getRelatedListRecords wire adapters which will not satisfy a GraphQL prompt. DO NOT TRIGGER only if the prompt forbids GraphQL, chooses UIAPI/Apex (use experience-lds-best-practices-apply), or asks for data requirements (use experience-lds-data-requirements-generate).
Stores and retrieves genomic variant calls with TileDB-VCF. Use for indexed single-sample VCF/BCF ingestion, incremental cohorts, region and sample queries, streaming results, allele statistics, QC, and VCF/BCF export locally or through TileDB Cloud.
CDF Data Modeling limits: concurrency (429s), pagination, batching, search vs filter, QueuedTaskRunner, and the cap on LLM calls over query results (5 default, 50 max, cached). Triggers: DMS limits, 429, pagination, nextCursor, cdfTaskRunner, instances.query, chat completions over query results.
Redis LangCache guidance for semantic caching of LLM responses on Redis Cloud — calling search/set via the SDK or REST API, tuning the similarity threshold, separating caches per task type, and filtering with custom attributes. Use when caching LLM completions or RAG answers to cut API cost and latency, building a cache-aside layer in front of OpenAI / Anthropic / etc., tuning hit rate vs precision, or splitting one app's LLM workloads into multiple LangCache caches.
Analyzes and engineers protein glycosylation by scanning canonical N-glycosylation sequons, describing S/T-rich regions, checking curated glycan evidence, and preparing NetNGlyc, NetOGlyc and GlycoSHIELD workflows. Use for glycoprotein engineering, antibody Fc glycosylation, glycan shielding, and site-specific glycoproteomics interpretation.
Queries a pinned Precision Medicine Knowledge Graph (PrimeKG) CSV for typed gene, drug, disease, and phenotype nodes, direct associations, disease context, and one- or two-hop paths. Use for PrimeKG reproducibility, biological association lookup, and hypothesis generation with relation and data provenance preserved.
Track and visualize ML training experiments with Trackio. Use when logging metrics during training (Python API), firing alerts for training diagnostics, or retrieving/analyzing logged metrics (CLI). Supports real-time dashboard visualization, alerts with webhooks, HF Space syncing, and JSON output for automation
Read and write large cuPyNumeric arrays to HDF5 with Legate's parallel, distributed HDF5 I/O (legate.io.hdf5: to_file, from_file, from_file_batched). Use when a developer needs to save a cuPyNumeric array to an .h5/.hdf5 file, load an HDF5 dataset into a distributed cuPyNumeric array, read a large HDF5 dataset in chunks, hand arrays to an HPC pipeline as a single file, or accelerate HDF5 disk I/O with GPUDirect Storage (GDS). Do not use it for Parquet/cuDF/raw-binary or other sharded/custom layouts (see the cupynumeric-parallel-data-load skill), Zarr or object-store/S3 output, .npz or pickled archives, plain h5py without cuPyNumeric, or pure array compute such as FFT, matmul, or reductions.
Run evaluations for Hugging Face Hub models using inspect-ai and lighteval on local hardware. Use for backend selection, local GPU evals, and choosing between vLLM / Transformers / accelerate. Not for HF Jobs orchestration, model-card PRs, .eval_results publication, or community-evals automation.
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.
Use this skill to run top-level VSS fusion search on archived video, or to ingest video files / RTSP streams for search. Do NOT use for ad-hoc visual Q&A (use vss-ask-video), live captioning (use vss-deploy-dense-captioning), or video summarization and reports (use vss-summarize-video).
This skill should be used when completing LBO (Leveraged Buyout) model templates in Excel for private equity transactions, deal materials, or investment committee presentations. The skill fills in formulas, validates calculations, and ensures professional formatting standards that adapt to any template structure.
Review fixed income portfolios by pricing multiple bonds, retrieving reference data, analyzing cashflows, and running scenario analysis. Use when reviewing bond portfolios, computing portfolio duration and DV01, analyzing cashflow waterfalls, stress testing rate scenarios, or assessing portfolio composition.
Compares public disclosures and earnings releases of domestic and overseas listed companies, summarizing changes in the three main financial statements, business and competitive landscape, key dates, and share prices at the time of lookup in a six-section Korean chat analysis. Use for company analysis, earnings release summaries, and figure verification. Does not provide trading recommendations or create PDF reports.
Redis Cluster and replication guidance covering hash tags for multi-key operations, avoiding CROSSSLOT errors, and reading from replicas to scale read-heavy workloads. Use when designing keys for a sharded Redis Cluster, debugging CROSSSLOT errors on MGET / SDIFF / pipelines, configuring a multi-key transaction in a cluster, or routing reads to replicas for caches, analytics, or dashboards.
Shared knowledge base of standards, including writing guidelines for mathematical modeling competitions, quick reference for avoiding common problem-type errors, and chart standards. Other skills consult it as needed during execution; no separate trigger is required.
Master skill that runs the full PlanetScale safe best-practices assessment — inventory, engine review, Insights, Traffic Control, webhooks, schema recommendations, codebase instrumentation, and agent operating model — then produces a unified recommendations report. Never applies changes without explicit approval. Use when the user asks to run the full assessment, all skills, or PlanetScale best-practices review.
Use this skill when deploying, operating, or integrating the VSS 3.2 GA RT-Embed Video Embedding microservice. Covers Docker Compose bring-up, GPU and storage prerequisites, the `/v1` REST API (file uploads, text and video embeddings, live RTSP streams, health and metrics), Redis/Kafka/OTel integration, common failure modes, and teardown
New to MCP?
From what the protocol is to installing your first server, these answers cover most first questions.
An open protocol that defines how AI applications connect to external tools and data in a uniform way. Clients talk to the model; MCP servers provide tools, resources and prompt templates. They exchange standard messages, so one server can be reused by many clients.